NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318572_10410389

Scaffold Ga0318572_10410389


Overview

Basic Information
Taxon OID3300031681 Open in IMG/M
Scaffold IDGa0318572_10410389 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)805
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007671Metagenome / Metatranscriptome347Y
F089186Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0318572_104103891F007671N/AVTSSPNRATSPLQLAGTSLGYTEADLSRLLEVSGGGPLSAPEDVRRIIDGYQYLDDWRADYRIQSVRSSLHSSRITCIDAAILSYGLLELLCPRIERRLLAIHRRDPKSGEEVGHCVALYWAATGRIGAISKSSFKGLGHREPIFPDETAVASSLAKAYVDMGFQPLYFGVTTLEEAAPDIDWRFHPDALTVL
Ga0318572_104103892F089186N/ATGKLIDSFIAHTRADQNLDHANAFLLMCQSVPPLTMHEVNDALNVARNMAEHLVLFMDGIDTFYANFEVVPRLPCDLLSE

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